Report for Sequence Feature Glyma12g31600
Feature Type: gene_model
Chromosome: Gm12
Start: 35177018
stop: 35180443
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma12g31600
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G22070 AT
Annotation by Michelle Graham. TAIR10: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr5:7308255-7309343 FORWARD LENGTH=362
SoyBase E_val: 2.00E-172 ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0016757 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups
SoyBase N/A ISS
KOG0799
KOG
Branching enzyme
JGI ISS
PF02485 PFAM
Core-2/I-Branching enzyme
JGI ISS
UniRef100_Q9C581 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein n=2 Tax=Arabidopsis thaliana RepID=Q9C581_ARATH
SoyBase E_val: 1.00E-169 ISS
UniRef100_UPI0001B638D3 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0001B638D3 related cluster n=1 Tax=unknown RepID=UPI0001B638D3
SoyBase E_val: 0 ISS
Expression Patterns of Glyma12g31600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma12g31600
Paralog Evidence Comments
Glyma13g38810 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma12g31600 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.12g189800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma12g31600
Transcripts of Glyma12g31600
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma12g31600.5 sequence type=transcript gene model=Glyma12g31600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TGTTATCGTTGAGAAATAGTAGTGCTTGGCTATTAACAACGCACAAAACAAAATAATTGGTAGGGTTAGTAGGGTGGGTAAAGAAAACTGCATTTTTTATCCATGTGTTATTGTTTATCCAGAAAGGTACCTAACTGTGAAATTTGAATCCCGAAAACAAACAAACGCGTACGTTACATGTCGTACAGTAACATCTGGCAGTTACAGTAAAGCGTGAAGAAAAAACATAAAAATCCCAAGCCCTCCTCGTTCCGGTTCCTGATCTTTTTCTTCTTTCCCTCCTGATTGGAAATAGAATCAGAATTGCAGAGCAGTGGTGGTGGTGGTGGTGGTGGTGGTAGTAGGAGTGAATCGAAGATAATGTTCTCAAGCCCATTCGTGTTAACCTTGTCTCTCTTGATATCCCTACCAATCCTGTTCTTGGTGGCCCCACGCATCCTCCCTCCTCCTCCTCCTCCTCAGTCCTTCCACATCTCCCCCTCCGACGAAGTCGATGACATCAAGCTCTTCAACCGCGCCATCTCCCTTTCCTCCCCCCATTCCCACTTCCACCTCTCCTCCAAAAACCCCTCTCTTAAAATCGCCTTTCTCTTCCTCACTAACTCCGATCTCCACTTCTCCTCCTTATGGGACCAGTTCTTCTCCAACACCCCCTCCAACCTTTTCAACATCTACATCCACGCCGACCCCTCCGTCAACCTCACCCGCCCTTTGTCCCCTCTTTTCATCAACAAATTCATCTCCTCCAAACGCACCTTCCGCTCCTCCCCTACCCTAATCTCCGCCACCCGCCGCCTCCTCGCCACCGCCCTCCTCGACGACCCCTCCAACGCCTACTTCGCCCTCCTCTCCCAGCACTGCATCCCTCTCCACTCCTTCTCCTACACCTACAAGTCCCTCTTCCTCTCCCCCACCTTCGACTCCCAAGACCCCGAATCTTCTTCTTCCACCCGCTTCGGCCTCCGCCTCAAATACAAGTCCTTCGTCGAGATCCTCTCCCACGCTCCCAAGCTCTGGAAGCGCTACACCTCCCGGGGTCGCTACGCCATGATGCCGGAGATCCCCTTCGAAGCTTTCCGCGTGGGCTCTCAGTTCTTCACGCTCACGCGCCGCCACGCGCTGGTCGTCGTCAAGGATAGGACCCTGTGGCAGAAATTCAAGATCCCGTGTTACCGTGACGATGAATGCTACCCTGAGGAGCATTATTTTCCGACCCTGTTGTCCATGGCGGATCCTGATGGCTGCACCAAATACACGCTCACCAGGGTTAATTGGACCGGCACCGTCAACGGTCATCCTTACACTTACCGGCCCACGGAGGTCTCGCCGGAACTCATTCTCCGCCTCCGGAAGTCCAACCATTCCGAGTCTTACCTCTTCGCCAGGAAATTCACCCCGGATTGCTTGGAGCCCTTGATGCGCATTGCCAAATCGGTCATCTTCAGGGATTGAAATTGAAAACATGGTGGAAAAGGCCTGTGAAGAGCTTGCTGTTGCTGTGGCTGTAGCTTGATGGTGGTGTATAGTTTGAAGAGGCAGGAACAGCCCACATCCTATATACATACCGGGAACTCTCAAATTGAGAGACTTGGGATTACACAAATTGAGGGAATTCAAAGCAAAGAAATAGGTAAAACACCTGCGTGAGTTGAAATGGAAATGCGGGTGCTCTATTCAAGTGTATTTAGTTGGGATGCAAGTGCTAAGTAATTGCCTATTTGTCATACAGGATTATGTAGATTTCTTTCCTTTTGTGGGATGGTTTTTGTACATACGAGTTGTGTAAACATTGTTTGAAAGCTCTACAGTGTTACTACTTTTGAACAACAAAAAAAAGAGTTGTTGTCTAAACGTGACGCAACAGGGACTGTAATTATAAAAGGCAAAAAAGAAACAATCTTTCAACATTTGGCTAATTGCTTCTCCATTCGAATTGATCCCTTTGTCACCCACCCTGCTATATCCCCACCCGTTTACCTCTTTTTTCTTTTGTTCTTTTTGGGTCTTTGTATTAATTAGTCTGTGATGATGATGATCCCTTTCTTCTGTGGAAAGTATCAGATAGTTGCTATAATCTCACTCCATTAGATTATTTGTAAAATTTATGTGGAGTAATTATGGGATGAGTTGCTAGCTATGTTTTAATATTATTACTATTATATGATCACGTTGAAGCGGCGATGACCCTGACCAAATA
>Glyma12g31600.6 sequence type=transcript gene model=Glyma12g31600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
CTGATCTTTTTCTTCTTTCCCTCCTGATTGGAAATAGAATCAGAATTGCAGAGCAGTGGTGGTGGTGGTGGTGGTGGTGGTAGTAGGAGTGAATCGAAGATAATGTTCTCAAGCCCATTCGTGTTAACCTTGTCTCTCTTGATATCCCTACCAATCCTGTTCTTGGTGGCCCCACGCATCCTCCCTCCTCCTCCTCCTCCTCAGTCCTTCCACATCTCCCCCTCCGACGAAGTCGATGACATCAAGCTCTTCAACCGCGCCATCTCCCTTTCCTCCCCCCATTCCCACTTCCACCTCTCCTCCAAAAACCCCTCTCTTAAAATCGCCTTTCTCTTCCTCACTAACTCCGATCTCCACTTCTCCTCCTTATGGGACCAGTTCTTCTCCAACACCCCCTCCAACCTTTTCAACATCTACATCCACGCCGACCCCTCCGTCAACCTCACCCGCCCTTTGTCCCCTCTTTTCATCAACAAATTCATCTCCTCCAAACGCACCTTCCGCTCCTCCCCTACCCTAATCTCCGCCACCCGCCGCCTCCTCGCCACCGCCCTCCTCGACGACCCCTCCAACGCCTACTTCGCCCTCCTCTCCCAGCACTGCATCCCTCTCCACTCCTTCTCCTACACCTACAAGTCCCTCTTCCTCTCCCCCACCTTCGACTCCCAAGACCCCGAATCTTCTTCTTCCACCCGCTTCGGCCTCCGCCTCAAATACAAGTCCTTCGTCGAGATCCTCTCCCACGCTCCCAAGCTCTGGAAGCGCTACACCTCCCGGGGTCGCTACGCCATGATGCCGGAGATCCCCTTCGAAGCTTTCCGCGTGGGCTCTCAGTTCTTCACGCTCACGCGCCGCCACGCGCTGGTCGTCGTCAAGGATAGGACCCTGTGGCAGAAATTCAAGATCCCGTGTTACCGTGACGATGAATGCTACCCTGAGGAGCATTATTTTCCGACCCTGTTGTCCATGGCGGATCCTGATGGCTGCACCAAATACACGCTCACCAGGGTTAATTGGACCGGCACCGTCAACGGTCATCCTTACACTTACCGGCCCACGGAGGTCTCGCCGGAACTCATTCTCCGCCTCCGGAAGTCCAACCATTCCGAGTCTTACCTCTTCGCCAGGAAATTCACCCCGGATTGCTTGGAGCCCTTGATGCGCATTGCCAAATCGGTCATCTTCAGGGATTGAAATTGAAAACATGTTGAGATAACTTTGTTCCATCAAATTTTATTCTAGCAGGTGGAAAAGGCCTGTGAAGAGCTTGCTGTTGCTGTGGCTGTAGCTTGATGGTGGTGTATAGTTTGAAGAGGCAGGAACAGCCCACATCCTATATACATACCGGGAACTCTCAAATTGAGAGACTTGGGATTACACAAATTGAGGGAATTCAAAGCAAAGAAATAGGTAAAACACCTGCGTGAGTTGAAATGGAAATGCGGGTGCTCTATTCAAGTGTATTTAGTTGGGATGCAAGTGCTAAGTAATTGCCTATTTGTCATACAGGATTATGTAGATTTCTTTCCTTTTGTGGGATGGTTTTTGTACATACGAGTTGTGTAAACATTGTTTGAAAGCTCTACAGTGTTACTACTTTTGAACAACAAAAAAAAGAGTTGTTGTCTAAACGTGACGCAACAGGGACTGTAATTATAAAAGGCAAAAAAGAAACAATCTTTCAACATTTGGCTAATTGCTTCTCCATTCGA
Coding sequences of Glyma12g31600
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma12g31600.4 sequence type=CDS gene model=Glyma12g31600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTTCTCAAGCCCATTCGTGTTAACCTTGTCTCTCTTGATATCCCTACCAATCCTGTTCTTGGTGGCCCCACGCATCCTCCCTCCTCCTCCTCCTCCTCAGTCCTTCCACATCTCCCCCTCCGACGAAGTCGATGACATCAAGCTCTTCAACCGCGCCATCTCCCTTTCCTCCCCCCATTCCCACTTCCACCTCTCCTCCAAAAACCCCTCTCTTAAAATCGCCTTTCTCTTCCTCACTAACTCCGATCTCCACTTCTCCTCCTTATGGGACCAGTTCTTCTCCAACACCCCCTCCAACCTTTTCAACATCTACATCCACGCCGACCCCTCCGTCAACCTCACCCGCCCTTTGTCCCCTCTTTTCATCAACAAATTCATCTCCTCCAAACGCACCTTCCGCTCCTCCCCTACCCTAATCTCCGCCACCCGCCGCCTCCTCGCCACCGCCCTCCTCGACGACCCCTCCAACGCCTACTTCGCCCTCCTCTCCCAGCACTGCATCCCTCTCCACTCCTTCTCCTACACCTACAAGTCCCTCTTCCTCTCCCCCACCTTCGACTCCCAAGACCCCGAATCTTCTTCTTCCACCCGCTTCGGCCTCCGCCTCAAATACAAGTCCTTCGTCGAGATCCTCTCCCACGCTCCCAAGCTCTGGAAGCGCTACACCTCCCGGGGTCGCTACGCCATGATGCCGGAGATCCCCTTCGAAGCTTTCCGCGTGGGCTCTCAGTTCTTCACGCTCACGCGCCGCCACGCGCTGGTCGTCGTCAAGGATAGGACCCTGTGGCAGAAATTCAAGATCCCGTGTTACCGTGACGATGAATGCTACCCTGAGGAGCATTATTTTCCGACCCTGTTGTCCATGGCGGATCCTGATGGCTGCACCAAATACACGCTCACCAGGGTTAATTGGACCGGCACCGTCAACGGTCATCCTTACACTTACCGGCCCACGGAGGTCTCGCCGGAACTCATTCTCCGCCTCCGGAAGTCCAACCATTCCGAGTCTTACCTCTTCGCCAGGAAATTCACCCCGGATTGCTTGGAGCCCTTGATGCGCATTGCCAAATCGGTCATCTTCAGGGATTGA
>Glyma12g31600.5 sequence type=CDS gene model=Glyma12g31600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTTCTCAAGCCCATTCGTGTTAACCTTGTCTCTCTTGATATCCCTACCAATCCTGTTCTTGGTGGCCCCACGCATCCTCCCTCCTCCTCCTCCTCCTCAGTCCTTCCACATCTCCCCCTCCGACGAAGTCGATGACATCAAGCTCTTCAACCGCGCCATCTCCCTTTCCTCCCCCCATTCCCACTTCCACCTCTCCTCCAAAAACCCCTCTCTTAAAATCGCCTTTCTCTTCCTCACTAACTCCGATCTCCACTTCTCCTCCTTATGGGACCAGTTCTTCTCCAACACCCCCTCCAACCTTTTCAACATCTACATCCACGCCGACCCCTCCGTCAACCTCACCCGCCCTTTGTCCCCTCTTTTCATCAACAAATTCATCTCCTCCAAACGCACCTTCCGCTCCTCCCCTACCCTAATCTCCGCCACCCGCCGCCTCCTCGCCACCGCCCTCCTCGACGACCCCTCCAACGCCTACTTCGCCCTCCTCTCCCAGCACTGCATCCCTCTCCACTCCTTCTCCTACACCTACAAGTCCCTCTTCCTCTCCCCCACCTTCGACTCCCAAGACCCCGAATCTTCTTCTTCCACCCGCTTCGGCCTCCGCCTCAAATACAAGTCCTTCGTCGAGATCCTCTCCCACGCTCCCAAGCTCTGGAAGCGCTACACCTCCCGGGGTCGCTACGCCATGATGCCGGAGATCCCCTTCGAAGCTTTCCGCGTGGGCTCTCAGTTCTTCACGCTCACGCGCCGCCACGCGCTGGTCGTCGTCAAGGATAGGACCCTGTGGCAGAAATTCAAGATCCCGTGTTACCGTGACGATGAATGCTACCCTGAGGAGCATTATTTTCCGACCCTGTTGTCCATGGCGGATCCTGATGGCTGCACCAAATACACGCTCACCAGGGTTAATTGGACCGGCACCGTCAACGGTCATCCTTACACTTACCGGCCCACGGAGGTCTCGCCGGAACTCATTCTCCGCCTCCGGAAGTCCAACCATTCCGAGTCTTACCTCTTCGCCAGGAAATTCACCCCGGATTGCTTGGAGCCCTTGATGCGCATTGCCAAATCGGTCATCTTCAGGGATTGA
>Glyma12g31600.6 sequence type=CDS gene model=Glyma12g31600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTTCTCAAGCCCATTCGTGTTAACCTTGTCTCTCTTGATATCCCTACCAATCCTGTTCTTGGTGGCCCCACGCATCCTCCCTCCTCCTCCTCCTCCTCAGTCCTTCCACATCTCCCCCTCCGACGAAGTCGATGACATCAAGCTCTTCAACCGCGCCATCTCCCTTTCCTCCCCCCATTCCCACTTCCACCTCTCCTCCAAAAACCCCTCTCTTAAAATCGCCTTTCTCTTCCTCACTAACTCCGATCTCCACTTCTCCTCCTTATGGGACCAGTTCTTCTCCAACACCCCCTCCAACCTTTTCAACATCTACATCCACGCCGACCCCTCCGTCAACCTCACCCGCCCTTTGTCCCCTCTTTTCATCAACAAATTCATCTCCTCCAAACGCACCTTCCGCTCCTCCCCTACCCTAATCTCCGCCACCCGCCGCCTCCTCGCCACCGCCCTCCTCGACGACCCCTCCAACGCCTACTTCGCCCTCCTCTCCCAGCACTGCATCCCTCTCCACTCCTTCTCCTACACCTACAAGTCCCTCTTCCTCTCCCCCACCTTCGACTCCCAAGACCCCGAATCTTCTTCTTCCACCCGCTTCGGCCTCCGCCTCAAATACAAGTCCTTCGTCGAGATCCTCTCCCACGCTCCCAAGCTCTGGAAGCGCTACACCTCCCGGGGTCGCTACGCCATGATGCCGGAGATCCCCTTCGAAGCTTTCCGCGTGGGCTCTCAGTTCTTCACGCTCACGCGCCGCCACGCGCTGGTCGTCGTCAAGGATAGGACCCTGTGGCAGAAATTCAAGATCCCGTGTTACCGTGACGATGAATGCTACCCTGAGGAGCATTATTTTCCGACCCTGTTGTCCATGGCGGATCCTGATGGCTGCACCAAATACACGCTCACCAGGGTTAATTGGACCGGCACCGTCAACGGTCATCCTTACACTTACCGGCCCACGGAGGTCTCGCCGGAACTCATTCTCCGCCTCCGGAAGTCCAACCATTCCGAGTCTTACCTCTTCGCCAGGAAATTCACCCCGGATTGCTTGGAGCCCTTGATGCGCATTGCCAAATCGGTCATCTTCAGGGATTGA
Predicted protein sequences of Glyma12g31600
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma12g31600.4 sequence type=predicted peptide gene model=Glyma12g31600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MFSSPFVLTLSLLISLPILFLVAPRILPPPPPPQSFHISPSDEVDDIKLFNRAISLSSPHSHFHLSSKNPSLKIAFLFLTNSDLHFSSLWDQFFSNTPSNLFNIYIHADPSVNLTRPLSPLFINKFISSKRTFRSSPTLISATRRLLATALLDDPSNAYFALLSQHCIPLHSFSYTYKSLFLSPTFDSQDPESSSSTRFGLRLKYKSFVEILSHAPKLWKRYTSRGRYAMMPEIPFEAFRVGSQFFTLTRRHALVVVKDRTLWQKFKIPCYRDDECYPEEHYFPTLLSMADPDGCTKYTLTRVNWTGTVNGHPYTYRPTEVSPELILRLRKSNHSESYLFARKFTPDCLEPLMRIAKSVIFRD*
>Glyma12g31600.5 sequence type=predicted peptide gene model=Glyma12g31600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MFSSPFVLTLSLLISLPILFLVAPRILPPPPPPQSFHISPSDEVDDIKLFNRAISLSSPHSHFHLSSKNPSLKIAFLFLTNSDLHFSSLWDQFFSNTPSNLFNIYIHADPSVNLTRPLSPLFINKFISSKRTFRSSPTLISATRRLLATALLDDPSNAYFALLSQHCIPLHSFSYTYKSLFLSPTFDSQDPESSSSTRFGLRLKYKSFVEILSHAPKLWKRYTSRGRYAMMPEIPFEAFRVGSQFFTLTRRHALVVVKDRTLWQKFKIPCYRDDECYPEEHYFPTLLSMADPDGCTKYTLTRVNWTGTVNGHPYTYRPTEVSPELILRLRKSNHSESYLFARKFTPDCLEPLMRIAKSVIFRD*
>Glyma12g31600.6 sequence type=predicted peptide gene model=Glyma12g31600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MFSSPFVLTLSLLISLPILFLVAPRILPPPPPPQSFHISPSDEVDDIKLFNRAISLSSPHSHFHLSSKNPSLKIAFLFLTNSDLHFSSLWDQFFSNTPSNLFNIYIHADPSVNLTRPLSPLFINKFISSKRTFRSSPTLISATRRLLATALLDDPSNAYFALLSQHCIPLHSFSYTYKSLFLSPTFDSQDPESSSSTRFGLRLKYKSFVEILSHAPKLWKRYTSRGRYAMMPEIPFEAFRVGSQFFTLTRRHALVVVKDRTLWQKFKIPCYRDDECYPEEHYFPTLLSMADPDGCTKYTLTRVNWTGTVNGHPYTYRPTEVSPELILRLRKSNHSESYLFARKFTPDCLEPLMRIAKSVIFRD*